BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB005H10SP1|AL425446
(859 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1772 252 9e-67
>3x_Contig1772
Length = 25851
Score = 252 bits (122), Expect = 9e-67
Identities = 384/472 (81%), Gaps = 1/472 (0%)
Strand = Plus / Plus
Query: 64 tgtttgaattatgttaagtgttaagagtttttaaatgttagatrttrttgaaagttttga 123
||||||| || ||| |||| || |||||||||| ||| ||| || |||| ||| || |
Sbjct: 4142 tgtttgacttctgtcaagtcttcagagtttttacctgtcagaccttcttgacagtcttca 4201
Query: 124 taaatggtgaaattaaaartagttgtatagtratggtaagagtaatttttratgtgatga 183
|| |||||||| ||| | ||||||||| || ||||| |||||||||||| |||| ||||
Sbjct: 4202 tacatggtgaacttaccactagttgtatcgtcatggtcagagtaatttttcatgtcatga 4261
Query: 184 taaatttgattgaaaattgaatatarttgattgatgggatrtttggagaaaatagttaat 243
||| |||||||||| |||||||||| || ||| |||| || ||||||||| ||||||| |
Sbjct: 4262 taactttgattgaacattgaatatacttcattcatggcatctttggagaacatagttact 4321
Query: 244 gtdggaga-tttgarttarratgagaatgtraggttaaaaratrtggttgaatgtatrrt 302
|| ||||| ||||| ||| || ||||||| ||||||| || ||||| ||||| | |
Sbjct: 4322 gtcggagactttgacttaccatcagaatgtccggttaaaccatctggttcaatgtctcct 4381
Query: 303 tttaaaggaaggattgaagttgtagttaarttatgatartrgggagattttggttgraga 362
|||||||||||||||||||||||||||| |||||||| | ||||||||||||||| |||
Sbjct: 4382 tttaaaggaaggattgaagttgtagttaccttatgatactcgggagattttggttgcaga 4441
Query: 363 rrtrttttrttratgggtttggaattrtrgtgattatkttrttrraaatgtggtttgara 422
| |||| || |||||||||||||| | |||||||| || || |||||| |||||| |
Sbjct: 4442 cctcttttcttcatgggtttggaattctcgtgattattttcttccaaatgtcgtttgaca 4501
Query: 423 atggaatttttttrattatagtagaagtttattggtagtgagaaarattgttgaataaaa 482
|||||||||||| ||||||||| ||||| ||| ||||| ||| || || |||| ||
Sbjct: 4502 ctggaatttttttccttatagtagcagtttcttgctagtgccaaaacttcttcaatacaa 4561
Query: 483 tartrrtgatggggtgtagggtatagtaattgaraatttgtttgtatttttt 534
|| | | || | ||||||||||||||||| | ||||||||||||||||||
Sbjct: 4562 tactcctcatccgctgtagggtatagtaattcaaaatttgtttgtatttttt 4613
Score = 159 bits (77), Expect = 9e-39
Identities = 214/261 (81%)
Strand = Plus / Plus
Query: 599 aataatggtattttataaaaatatgtttgagaaaagatgttagattgtttaaatggrgat 658
|||| ||||||||||| |||| |||||| |||||| ||||||||||||| ||||| | |
Sbjct: 4679 aatactggtattttatccaaatctgtttgcgaaaagctgttagattgtttcaatggcgct 4738
Query: 659 atagtagataatgatttaaaaggtatggaaggggtatgawtatatttatttagggtttta 718
|| |||||| ||||||||||||||||| || |||||| | | ||||||| ||||||||
Sbjct: 4739 atcgtagatcctgatttaaaaggtatggccggcgtatgattctctttatttcgggtttta 4798
Query: 719 tatggtggaaaggtagggaggtwatkaatwaaaataaatttatwattttgragttattat 778
|||||||| ||||||||||||| | | || |||||||||| |||||| |||| || |
Sbjct: 4799 tatggtggcaaggtagggaggtcctgcctcaacataaatttatcattttgcagttcttct 4858
Query: 779 trattataagaaaataattgaaattttaaagtggatttaaaagagttatgagatatttaa 838
| ||||| || ||||| ||| |||||| ||||||||| || ||||| || ||| ||| |
Sbjct: 4859 tcattatcagcaaatacttgcaattttccagtggatttcaacgagttctgcgatctttca 4918
Query: 839 garatggtattataattattg 859
|| ||| |||||| |||||||
Sbjct: 4919 gacatgctattatcattattg 4939
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.43 0.719 1.35
Gapped
Lambda K H
1.43 0.719 1.35
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5483
Number of Sequences: 1807
Number of extensions: 5483
Number of successful extensions: 138
Number of sequences better than 1.0e-20: 1
length of query: 859
length of database: 10,358,551
effective HSP length: 16
effective length of query: 843
effective length of database: 10,329,639
effective search space: 8707885677
effective search space used: 8707885677
T: 0
A: 40
X1: 5 (10.3 bits)
X2: 14 (28.9 bits)
S1: 11 (23.2 bits)
S2: 48 (99.6 bits)